| Bioinformatics |
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| R&D PROGRAMMES
AND ACHIEVEMENTS |
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| South Asia Legume
Database developed in collaboration with University of Reading,
UK under the aegis of International Legume Database Information
Service (ILDIS) |
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| NBRI-BC is the first in
South Asia, which has joined the International network programme
on plant based Bioinformatics – International Legume Database
and Information Service (ILDIS) by establishing the regional center
for ILDIS for South Asia. NBRI-BC pursued the work in international
ILDIS project as per proposed targets and following national/
international workshops were organized: |
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- International Workshop at NBRI, Lucknow, INDIA (7-13 March,
1994). (1&2)
- International Workshop at NBRI, Lucknow, INDIA (26-30 April,
1995) and Tribhuwan University, NEPAL (1-3 May, 1995). (3&4)
- International Workshop in INDIA, MALDIVES and SRI LANKA
(3-11 March, 1997). (5)
- UNESCO sponsored International training course in MAURITIUS
(26-30 January, 1998).
- UNESCO sponsored International training course in SRI LANKA
& MALDIVES (30 May to 2 June, 1998).
- Session on plant diversity databases and on-line demonstration
in a two-day lecture–discussion-demonstration workshop
directed by Dr. P. Pushpangadan, on Procedures for Establishment
of Gene Bank, Demonstration of Biodiversity database during
the International Symposium on the “Utilization of Natural
Products in developing Countries: Trends and Needs”
organized by the UNIVERSITY OF WEST INDIES, KINGSTON, JAMAICA
(10-20 July 2000). (6)
- Session on South Asia Legume Database and an on-line demonstration
in ILDIS workshop: New Directions on 4th July 2001 at the
Fourth International Legume Conference (ILC-4) at AUSTRALIAN
NATIONAL UNIVERSITY, CANBERRA, AUSTRALIA. (7 & 8)
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| NBRI coordinated the development
of this database of Legumes of eight South Asian countries viz.
India, Pakistan, Nepal, Bangladesh, Bhutan, Myanmar, Sri Lanka
and Maldives in collaboration with the University of Reading,
UK and the Royal Botanic Gardens, Kew, UK by simultaneously developing
two databases – ILDIS database using Alice software and
NBRI database that, in addition to the data categories defined
by ILDIS also contained geography details up-to the district level
and all published Vernacular Names in all regional languages.
Score sheets containing all the available information for each
tribe were printed from the NBRI database, which were further
edited. The NBRI database was accordingly modified and once
again the score sheets were printed in two formats – one
for the NBRI database and other for ILDIS database. The score
sheets were randomly checked with the original editing, to ensure
the correctness of data entry.
A South Asian slice of 620 taxa was received from ILDIS Directorate
at NBRI. Using this as a start-up database, the data from the
score sheets in ILDIS format was transferred into the ILDIS
database using the ALICE software ver. 2.0.
The ILDIS Phase I database on South Asian legumes contains
1968 taxa (1573 species and 395 infraspecific taxa) and occupies
about 26 MB of disk space. The bibliography in the printed checklist
lists various references including floras, monographs, checklists,
general reference works, miscellaneous articles, and even a
few references to individual specimens. The printed volume and
the database are the result of over four years’ work on
the part of the authors with much consultation with specialists
on various legume groups, ILDIS Directorate, University of Reading
(F. A. Bisby, Sue Hollis and Judith Heald) and the members of
the Herbarium at Royal Botanic Gardens, Kew (R. M. Polhill,
B. Schrire, J. M. Lock & L. Rico, etc.).
The Phase I database was subjected to a careful scrutiny to
improve the quality of the database at the Royal Botanical Gardens,
Kew, UK. The entire dataset was studied to ascertain the taxonomic
status of 20 such taxa that were not recorded in South Asian
literature but recorded by other botanists/ monographers outside
South Asia. The references for the place of occurrence for such
taxa were noted from the World Database of Legumes. These references
were then checked for the herbarium specimens cited in the reference
for the occurrence in South Asia. After examining the source
reference these taxa were treated as out-of-area records and
it was decided to retain them in the database and add relevant
notes. e.g. Acacia polyacantha Willd. subsp. polyacantha was
recorded as Native to Sri Lanka by Ross, 1979. However, this
species could not be traced in any South Asian literature. Hence,
“Recorded once for Sri Lanka but not recorded in literature
from that region” was added as note in the note field.
Some species were not out-of-area records and for them only
relevant notes had to added e.g. Vicia faba var. minor Beck.
was recorded as Introduced in India, Nepal and Pakistan by Bond,
1976, but was not traceable in any of the South Asian literature.
Dr. F. A. Bisby, Tribe Coordinator for Vicieae, suggested the
inclusion of the following notes in the database:
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- South Asian stocks of this crop are of two varieties [Bond,
1976].
- The infra-specific names are widely used in South Asia.
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| Ambiguity in author strings such as
occurrence of several similar author abbreviations, use of wrong
abbreviations for author names, etc. was standardized following
standards of Brummitt & Powell, 1992.
Relevant notes were included for a few taxa where the formation
of new combination was required. e.g. Moghania praecox var.
angusta (Craib)Mukerjee exists as Provisionally Accepted Name
in the database. A note has been added for this taxon stating,
“This species transferred to Flemingia, but a new combination
is needed for its variety”.
Authors or a group of authors were removed after ‘emend’
and the relevant notes were added in the note field.
The various checklists of South Asian region were lacking the
life form details in as many as 80 taxa. These were incorporated
after a thorough research using CD-ROM of Index Kewensis, protologue,
recent literature including monographs and regional floras and
consulting Herbarium specimens, etc. at RBG, Kew.
Attempts were made to include the infraspecific taxa details,
nomenclatural details and any other disputed information, etc.
in the notes, as far as possible, in a uniform pattern so as
to enable the researchers to advance work further on various
aspects of legumes of this region.
The complete list of bibliography was checked for the author
names, year of publications, etc. and the details of the references
were standardized as specified by S. Hollis, 1990. Any duplicity
was removed from the bibliography ‘dictionary’ by
making the record blank or adding pointers in the reference
for the original reference number.
In the South Asia checklist to reduce the volume
of publication, the number of references cited for each data
category has been reduced as per the criteria decided upon by
the ILDIS Coordinator. i.e. Just one reference may be attached
to the accepted name and synonym, which may be a major South
Asian Flora or a monographic treatment. Only one reference has
been retained for each country/ area, which is either a major
national flora or a monograph. Only South Asian references were
retained for literature pointers and vernacular names. The prioritization
of references was done on the bibliography list in order to
identify the references that must be retained in the checklist
before the actual reduction was done.
After incorporating these changes, country checklists were
generated using Awrite utility in the Alice software package
for India, Nepal, Pakistan and Sri Lanka and sent to the respective
regional specialists for their comments.
The hard copy and electronic outputs for each tribe were further
sent to world experts (Tribe Coordinators) to obtain their final
opinion on the taxonomy of each tribe. (9)
South Asia Legume database is thus, the first authentic and
up-to date dataset on 2030 legumes of eight South Asian countries.
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| The database contains information on
most recent nomenclature (accepted name, and synonyms) and the
latest information on geographical distribution in South Asian
countries - India (1561 species (77%)), Pakistan (691 species
(34%)), Myanmar (607 species (30%)), Sri Lanka (512 species (25%)),
Nepal (469 species (23%)), Bhutan (324 species (15%)), Bangladesh
(255 species (12%)) and Maldives (45 species (2%)). Besides nomenclature
and geography, the database contains information on life form
details, conservation status, common names, description, economic
uses and bibliography etc. Thus this database with recent legume
taxonomy, distribution and descriptive data for legumes of South
Asia, is unique in a level of detail and authenticity that cannot
be found in any of the previously published sources from the South
Asia region (Fig. 1). |
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| The first output “A checklist
of Legumes of South Asia” has been published from
RBG, Kew in April 2003 and this formally launched on 6th June
2003 by the-then Hon’ble Minister of State, Science &
Technology (9). |
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Legumes of South Asia –A checklist
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Release of the Legumes of South Asia publication by Shri
Bachhi Singh Rawat, MOS for S&T.
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| NBRI BC holds the World Database of
19,554 Legumes and is connected online on Web with over 40 renowned
specialists worldwide (http://www.ildis.org) (10). |
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ILDIS Legumes
of the World CD |
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